About

Nevada Bioinformatics Center

Overview of Services

The Nevada Bioinformatics Center is a core facility providing bioinformatics research resources, services, and training in support of existing research programs and in the development of latest programs and grant applications to Nevada scientists, institutional collaborators, and industry clients.

We provide:

  • High-Throughput Sequence Data Analysis (Alignment and Assembly)
  • Single Cell RNA Sequencing Data Analysis
  • RNA-Seq Gene Level Data Analysis
  • RNA-Seq de Novo Transcriptome Assembly
  • Genome Resequencing
  • Proteomics Data Analysis
  • Microarray Data Analysis
  • Multi-omics and other Data Analysis
  • Biostatistics & Clinical Informatics
  • Experimental Design
  • Pathway Analysis with iPathwayGuide
  • Workshops/Seminars
  • Consultation

Please explore our Services page for more information or contact us directly. 

This core is supported by the NV INBRE and the MW CTR-IN, grants from the NIH National Institute of General Medical Sciences (GM103440, 5 U54 GM104944). The iLab license was provided by the NV INBRE Administrative Supplement, a grant from the NIH National Institute of General Medical Sciences (GM103440-14A1S1).

Location and hours of operation

Hours Location


Monday - Friday
9:00 AM - 4:00 PM             

Applied Research Facility
1664 N. Virginia Street,
Reno, NV 89557

Contacts

Name Role Phone Email Location
Juli Petereit
Director
 
(775) 784-4359
 
jpetereit@unr.edu
 
ARF 306
 
Hans Vasquez-Gross
Bioinformatics Scientist
 
(775) 784-7042
 
hvasquezgross@unr.edu
 
ARF 203
 
Cassandra Hui
Bioinformatician
 
(775) 682-9826
 
ckhui@unr.edu
 
ARF 203
 

Services Price List


Search available services:
Name Description Price
1-1 or small group Trainings and Workshops (Per Hour)

Offering specialized bioinformatics and data science trainings on demand in a 1-1 or small groupvsetting (in-person or virtual)

 Inquire
16S Microbial Community Analysis (Per Additional Sample)

Analysis of 16S rRNA genes, including QC of raw data, preprocessing, alignment, quantification, OUT clustering (ASV can be requested), relative abundance estimates and taxonomic classification, and statistical and microbial community analysis presented as box, stacked bar and PCA plots. Add-on services such as additional statistical analysis are available.

 Inquire
Basic Genome Assembly - Per Project

Genome (re)assembly for genome size < 5Gb. Data preprocessing, followed by de novo assembly, polishing, and submitting to NCBI (using the same data type, e.g.,illumina or PacBio). NOT INCLUDED: curation, annotation, phasing haplotypes (using Illumine, PacBio, and/or HiC) – but these services can be requested.

 Inquire
Data Analysis (Per Hour)

 

Custom bioinformatics analysis from experimental design to publication for a variety of omic-data, including but not limited to single-cell, metagenomics, gene-ontology, and functional enrichment analyses.

 Inquire
DIA Proteomics - Per Project (Up to 18 Samples)

Differential expression analysis for model or well-annotated organism, including QC of raw protein level intensity data, pre-processing and cleaning, and generation of tables of differentially expressed proteins for typical two-factor experiment.

 Inquire
DIA Proteomics (Per Additional Sample)

Differential expression analysis for model or well-annotated organism, including QC of raw protein level intensity data, pre-processing and cleaning, and generation of tables of differentially expressed proteins for typical two-factor experiment.

 Inquire
GBS-based GWAS Analysis - Per Project (Up to 1,000 Samples)

Genome Wide Association Study (GWAS) analysis based upon genotyping-based sequencing (GBS) includes QC with trimming, bwa mapping, SNP detection and QC followed by downstream analysis.

 Inquire
GBS-based GWAS Analysis - Per Project (Up to 500 Samples)

Genome Wide Association Study (GWAS) analysis based upon genotyping-based sequencing (GBS) includes QC with trimming, bwa mapping, SNP detection and QC followed by downstream analysis.

 Inquire
RNA-Seq (Per Additional Sample)

RNA-Seq differential expression analysis for model or well-annotated organism, including QC of raw data, preprocessing, alignment to genome, quantification, QC of feature counts, and generation of tables of differentially expressed genes for typical two-factor experiment.

 Inquire
RNA-Seq - Per Project (Up to 18 Samples)

RNA-Seq differential expression analysis for model or well-annotated organism, including QC of raw data, preprocessing, alignment to genome, quantification, QC of feature counts, and generation of tables of differentially expressed genes for typical two-factor experiment.

 Inquire
scSeq RNA-seq (10X, Parse) analysis (Per Project, up to 4 samples) Inquire
SNP Analysis - Per Project (Up to 5 Samples)

Variant analysis starting from raw data to QC, alignment, variant calling to VCF output and JBrowse integration.

 Inquire
SNP Analysis - Per Project (Up to 50 Samples)

Variant analysis starting from raw data to QC, alignment, variant calling to VCF output and JBrowse integration.

 Inquire
Software Architecture (Per Hour)

Building pipelines, writing custom code, and creating databases.

 Inquire
Technical Support (Per Hour)

Including, but not limited to Ubuntu-Linux workstations/server setup, troubleshooting remote access issues and general computer/software issues, assist in rackable server setup

 Inquire

Map